Identification of microRNAs Involved in Regeneration of the Secondary Vascular System in Populus tomentosa Carr.
Identifieur interne : 001822 ( Main/Exploration ); précédent : 001821; suivant : 001823Identification of microRNAs Involved in Regeneration of the Secondary Vascular System in Populus tomentosa Carr.
Auteurs : Fang Tang [République populaire de Chine] ; Hairong Wei [États-Unis] ; Shutang Zhao [République populaire de Chine] ; Lijuan Wang [République populaire de Chine] ; Huanquan Zheng [Canada] ; Mengzhu Lu [République populaire de Chine]Source :
- Frontiers in plant science [ 1664-462X ] ; 2016.
Abstract
Wood formation is a complex developmental process primarily controlled by a regulatory transcription network. MicroRNAs (miRNAs) can modulate the expression of target genes involved in plant growth and development by inducing mRNA degradation and translational repression. In this study, we used a model of secondary vascular system regeneration established in Populus tomentosa to harvest differentiating xylem tissues over time for high-throughput sequencing of small RNAs. Analysis of the sequencing data identified 209 known and 187 novel miRNAs during this regeneration process. Degradome sequencing analysis was then performed, revealing 157 and 75 genes targeted by 21 known and 30 novel miRNA families, respectively. Gene ontology enrichment of these target genes revealed that the targets of 15 miRNAs were enriched in the auxin signaling pathway, cell differentiation, meristem development, and pattern specification process. The major biological events during regeneration of the secondary vascular system included the sequential stages of vascular cambium initiation, formation, and differentiation stages in sequence. This study provides the basis for further analysis of these miRNAs to gain greater insight into their regulatory roles in wood development in trees.
DOI: 10.3389/fpls.2016.00724
PubMed: 27303419
PubMed Central: PMC4885845
Affiliations:
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Key Laboratory of Science and Technology of Bamboo and Rattan of State Forestry Administration, International Centre for Bamboo and RattanBeijing, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Key Laboratory of Science and Technology of Bamboo and Rattan of State Forestry Administration, International Centre for Bamboo and RattanBeijing, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing</wicri:regionArea><wicri:noRegion>Nanjing Forestry UniversityNanjing</wicri:noRegion></affiliation></author><author><name sortKey="Wei, Hairong" sort="Wei, Hairong" uniqKey="Wei H" first="Hairong" last="Wei">Hairong Wei</name><affiliation wicri:level="2"><nlm:affiliation>School of Forestry Resources and Environmental Science, Michigan Technological University Houghton, MI, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Forestry Resources and Environmental Science, Michigan Technological University Houghton, MI</wicri:regionArea><placeName><region type="state">Michigan</region></placeName></affiliation></author><author><name sortKey="Zhao, Shutang" sort="Zhao, Shutang" uniqKey="Zhao S" first="Shutang" last="Zhao">Shutang Zhao</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry Beijing</wicri:regionArea><wicri:noRegion>Chinese Academy of Forestry Beijing</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Lijuan" sort="Wang, Lijuan" uniqKey="Wang L" first="Lijuan" last="Wang">Lijuan Wang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry Beijing</wicri:regionArea><wicri:noRegion>Chinese Academy of Forestry Beijing</wicri:noRegion></affiliation></author><author><name sortKey="Zheng, Huanquan" sort="Zheng, Huanquan" uniqKey="Zheng H" first="Huanquan" last="Zheng">Huanquan Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology, McGill University Montreal, QC, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Biology, McGill University Montreal, QC</wicri:regionArea><wicri:noRegion>QC</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Mengzhu" sort="Lu, Mengzhu" uniqKey="Lu M" first="Mengzhu" last="Lu">Mengzhu Lu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing</wicri:regionArea><wicri:noRegion>Nanjing Forestry UniversityNanjing</wicri:noRegion></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Wood formation is a complex developmental process primarily controlled by a regulatory transcription network. MicroRNAs (miRNAs) can modulate the expression of target genes involved in plant growth and development by inducing mRNA degradation and translational repression. In this study, we used a model of secondary vascular system regeneration established in Populus tomentosa to harvest differentiating xylem tissues over time for high-throughput sequencing of small RNAs. Analysis of the sequencing data identified 209 known and 187 novel miRNAs during this regeneration process. Degradome sequencing analysis was then performed, revealing 157 and 75 genes targeted by 21 known and 30 novel miRNA families, respectively. Gene ontology enrichment of these target genes revealed that the targets of 15 miRNAs were enriched in the auxin signaling pathway, cell differentiation, meristem development, and pattern specification process. The major biological events during regeneration of the secondary vascular system included the sequential stages of vascular cambium initiation, formation, and differentiation stages in sequence. This study provides the basis for further analysis of these miRNAs to gain greater insight into their regulatory roles in wood development in trees. </div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">27303419</PMID><DateCompleted><Year>2016</Year><Month>06</Month><Day>15</Day></DateCompleted><DateRevised><Year>2020</Year><Month>10</Month><Day>01</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>7</Volume><PubDate><Year>2016</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Identification of microRNAs Involved in Regeneration of the Secondary Vascular System in Populus tomentosa Carr.</ArticleTitle><Pagination><MedlinePgn>724</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2016.00724</ELocationID><Abstract><AbstractText>Wood formation is a complex developmental process primarily controlled by a regulatory transcription network. MicroRNAs (miRNAs) can modulate the expression of target genes involved in plant growth and development by inducing mRNA degradation and translational repression. In this study, we used a model of secondary vascular system regeneration established in Populus tomentosa to harvest differentiating xylem tissues over time for high-throughput sequencing of small RNAs. Analysis of the sequencing data identified 209 known and 187 novel miRNAs during this regeneration process. Degradome sequencing analysis was then performed, revealing 157 and 75 genes targeted by 21 known and 30 novel miRNA families, respectively. Gene ontology enrichment of these target genes revealed that the targets of 15 miRNAs were enriched in the auxin signaling pathway, cell differentiation, meristem development, and pattern specification process. The major biological events during regeneration of the secondary vascular system included the sequential stages of vascular cambium initiation, formation, and differentiation stages in sequence. This study provides the basis for further analysis of these miRNAs to gain greater insight into their regulatory roles in wood development in trees. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Fang</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Key Laboratory of Science and Technology of Bamboo and Rattan of State Forestry Administration, International Centre for Bamboo and RattanBeijing, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wei</LastName><ForeName>Hairong</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>School of Forestry Resources and Environmental Science, Michigan Technological University Houghton, MI, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Shutang</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Lijuan</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Huanquan</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Biology, McGill University Montreal, QC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Mengzhu</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China; Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry UniversityNanjing, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>05</Month><Day>31</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Populus</Keyword><Keyword MajorTopicYN="N">degradome sequencing</Keyword><Keyword MajorTopicYN="N">high-throughput sequencing</Keyword><Keyword MajorTopicYN="N">microRNAs</Keyword><Keyword MajorTopicYN="N">regeneration</Keyword><Keyword 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sort="Zhao, Shutang" uniqKey="Zhao S" first="Shutang" last="Zhao">Shutang Zhao</name></country><country name="États-Unis"><region name="Michigan"><name sortKey="Wei, Hairong" sort="Wei, Hairong" uniqKey="Wei H" first="Hairong" last="Wei">Hairong Wei</name></region></country><country name="Canada"><noRegion><name sortKey="Zheng, Huanquan" sort="Zheng, Huanquan" uniqKey="Zheng H" first="Huanquan" last="Zheng">Huanquan Zheng</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001822 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001822 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:27303419
|texte= Identification of microRNAs Involved in Regeneration of the Secondary Vascular System in Populus tomentosa Carr.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:27303419" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |